LichtLab Sequencing - run details
Back to list
Project
*
Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
*
Choose one...
RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
*
Organism / cell line
*
ICBR number (if known)
Owner
Notes
mouse 3T3 cells expressing shRNA to N2G plus add back of N2G domains
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
176_A 176_B 176_C 177_A 177_B 177_C 178_A 178_B 178_C 179_A 179_B 179_C 180_A 180_B 180_C
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
PW177 PW176 PW178 PW177 PW179 PW177 PW180 PW177
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-11-09 13:19:17
Analysis done.
2023-11-07 15:46:02
PW176: shSC pInducer100 tet-on EGFP-C4 (scrambled shRNA, expressing EGFP as control) PW177: shN2 pInducer100 tet-on EGFP-C4 (N2G shRNA, expressing EGFP as control) PW178: shN2 pInducer100 tet-on EGFP-C4 N2-Ac (N2G shRNA, expressing the actin-binding N-term of N2G) PW179: shN2 pInducer100 tet-on EGFP-C4 N2-MT (N2G shRNA, expressing the MT-interacting C-term of N2G) PW180: shN2 pInducer100 tet-on EGFP-C4 N2-Ac/MT (N2G shRNA, expressing the actin-binding N-term and MT-interacting C-term of N2G) comparisons: