LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
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Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Beas2B_Parental_aIgG1 Beas2B_Parental_aIgG2 Beas2B_Parental_aH3K4me3-1 Beas2B_Parental_aH3K4me3-2 Beas2B_Parental_aHA1 Beas2B_Parental_aHA2 Beas2B_Parental_aH3-1 Beas2B_Parental_aH3-2 Beas2B_H3WT_HA_aIgG1 Beas2B_H3WT_HA_aIgG2 Beas2B_H3WT_HA_aH3K4me3-1 Beas2B_H3WT_HA_aH3K4me3-2 Beas2B_H3WT_HA_aHA1 Beas2B_H3WT_HA_aHA2 Beas2B_H3WT_HA_aH3-1 Beas2B_H3WT_HA_aH3-2 Beas2B_H3E97K_HA_Clone19_aIgG1 Beas2B_H3E97K_HA_Clone19_aIgG2 Beas2B_H3E97K_HA_Clone19_aH3K4me3-1 Beas2B_H3E97K_HA_Clone19_aH3K4me3-2 Beas2B_H3E97K_HA_Clone19_aHA1 Beas2B_H3E97K_HA_Clone19_aHA2 Beas2B_H3E97K_HA_Clone19_aH3-1 Beas2B_H3E97K_HA_Clone19_aH3-2 Beas2B_H3E97K_HA_Clone22_aIgG1 Beas2B_H3E97K_HA_Clone22_aIgG2 Beas2B_H3E97K_HA_Clone22_aH3K4me3-1 Beas2B_H3E97K_HA_Clone22_aH3K4me3-2 Beas2B_H3E97K_HA_Clone22_aHA1 Beas2B_H3E97K_HA_Clone22_aHA2 Beas2B_H3E97K_HA_Clone22_aH3-1 Beas2B_H3E97K_HA_Clone22_aH3-2 Beas2B_H3E97K_HA_Clone23_aIgG1 Beas2B_H3E97K_HA_Clone23_aIgG2 Beas2B_H3E97K_HA_Clone23_aH3K4me3-1 Beas2B_H3E97K_HA_Clone23_aH3K4me3-2 Beas2B_H3E97K_HA_Clone23_aHA1 Beas2B_H3E97K_HA_Clone23_aHA2 Beas2B_H3E97K_HA_Clone23_aH3-1 Beas2B_H3E97K_HA_Clone23_aH3-2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Beas2B_Parental_aH3K4me3-1/2 Beas2B_Parental_aIgG1/2 Beas2B_Parental_aHA-1/2 Beas2B_Parental_aIgG1/2 Beas2B_Parental_aH3-1/2 Beas2B_Parental_aIgG1/2 Beas2B_H3WT_HA_aH3K4me3-1/2 Beas2B_H3WT_HA_aIgG1/2 Beas2B_H3WT_HA_aHA-1/2 Beas2B_H3WT_HA_aIgG1/2 Beas2B_H3WT_HA_aH3-1/2 Beas2B_H3WT_HA_aIgG1/2 Beas2B_H3E97K_HA_Clone19_aH3K4me3-1/2 Beas2B_H3E97K_HA_Clone19_aIgG1/2 Beas2B_H3E97K_HA_Clone19_aHA-1/2 Beas2B_H3E97K_HA_Clone19_aIgG1/2 Beas2B_H3E97K_HA_Clone19_aH3-1/2 Beas2B_H3E97K_HA_Clone19_aIgG1/2 Beas2B_H3E97K_HA_Clone22_aH3K4me3-1/2 Beas2B_H3E97K_HA_Clone22_aIgG1/2 Beas2B_H3E97K_HA_Clone22_aHA-1/2 Beas2B_H3E97K_HA_Clone22_aIgG1/2 Beas2B_H3E97K_HA_Clone22_aH3-1/2 Beas2B_H3E97K_HA_Clone22_aIgG1/2 Beas2B_H3E97K_HA_Clone23_aH3K4me3-1/2 Beas2B_H3E97K_HA_Clone23_aIgG1/2 Beas2B_H3E97K_HA_Clone23_aHA-1/2 Beas2B_H3E97K_HA_Clone23_aIgG1/2 Beas2B_H3E97K_HA_Clone23_aH3-1/2 Beas2B_H3E97K_HA_Clone23_aIgG1/2
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-12-11 17:32:47
Analysis results:
https://lichtlab.cancer.ufl.edu/reports/H2B/NS3570/