LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
RNA prepared from undifferentiated 32D cells, Ribo depleted RNA-seq library prep by ICBR
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Three biological replicates of each genotype (12 samples): Parental 32D cells: P2, P3, P4 KMT2C KO cells: K3, K4, K5 DNMT3A KO cells: 47, 53, 65 KMT2C KO DNMT3A KO cells: 1, 11, 66
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Test vs. control: KMT2C KO Vs. Parental DNMT3A KO Vs. Parental KMT2C KO DNMT3A KO Vs. Parental KMT2C KO DNMT3A KO Vs. KMT2C KO KMT2C KO DNMT3A KO Vs. DNMT3A KO
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2024-04-10 16:00:13
Analysis results:
https://lichtlab.cancer.ufl.edu/reports/MDS/GE7334/