LichtLab Sequencing - run details
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Project
*
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
*
Organism / cell line
*
ICBR number (if known)
Owner
Notes
put in lele collaboration folder ribo-depletion - look at all RNAs
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
None0_NuMUG_1a None0_NuMUG_1b None0_NuMUG_1c dNesp_IAA0_NuMUG_2a dNesp_IAA0_NuMUG_2b dNesp_IAA0_NuMUG_2c dNesp_IAA2_NuMUG_3a dNesp_IAA2_NuMUG_3b dNesp_IAA2_NuMUG_3c dNesp_IAA8_NuMUG_4a dNesp_IAA8_NuMUG_4b dNesp_IAA8_NuMUG_4c None24_NuMUG_5a None24_NuMUG_5b None24_NuMUG_5c None_DMSO_NuMUG_6a None_DMSO_NuMUG_6b None_DMSO_NuMUG_6c IAA24_NuMUG_7a IAA24_NuMUG_7b IAA24_NuMUG_7c dNesp_DMSO_NuMUG_8a dNesp_DMSO_NuMUG_8b dNesp_DMSO_NuMUG_8c dNesp_IAA24_NuMUG_9a dNesp_IAA24_NuMUG_9b dNesp_IAA24_NuMUG_9c
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
dNESP_IAA0_NuMUG IAA24_NuMUG dNESP_IAA2_NuMUG IAA24_NuMUG dNESP_IAA8_NuMUG IAA24_NuMUG dNESP_IAA24_NuMUG IAA24_NuMUG dNESP_DMSO_NuMUG dNesp_IAA0_NuMUG_1 None0_NuMUG_1 dNESP_DMSO_NuMUG None0_NuMUG_1 dNesp_IAA0_NuMUG_1 dNESP_IAA24_NuMUG dNESP_DMSO_NuMUG dNESP_IAA24_NuMUG None0_NuMUG_1
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-06-23 15:58:41
Results:
https://lichtlab.cancer.ufl.edu/reports/LLC/GE6680/