| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | Sp1(Zf)/Promoter/Homer | 1e-4 | -1.019e+01 | 0.0099 | 113.0 | 3.15% | 983.7 | 2.12% | motif file (matrix) | |
| 2 | | GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-2 | -6.587e+00 | 0.1820 | 1909.0 | 53.15% | 23500.4 | 50.64% | motif file (matrix) | |
| 3 | | Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.017e+00 | 0.5832 | 287.0 | 7.99% | 3206.3 | 6.91% | motif file (matrix) | |
| 4 | | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-2 | -4.678e+00 | 0.6139 | 2572.0 | 71.60% | 32392.8 | 69.80% | motif file (matrix) | |
| 5 | | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.667e+00 | 0.6139 | 587.0 | 16.34% | 6923.7 | 14.92% | motif file (matrix) |