| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.298e+00 | 0.0657 | 792.0 | 17.92% | 7256.0 | 15.96% | motif file (matrix) |
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| 2 |  | GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -6.912e+00 | 0.1314 | 72.0 | 1.63% | 501.6 | 1.10% | motif file (matrix) |
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| 3 |  | GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-2 | -5.645e+00 | 0.3109 | 1482.0 | 33.53% | 14377.4 | 31.63% | motif file (matrix) |
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| 4 |  | PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.493e+00 | 0.3109 | 488.0 | 11.04% | 4468.0 | 9.83% | motif file (matrix) |
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| 5 |  | IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer | 1e-2 | -5.364e+00 | 0.3109 | 101.0 | 2.29% | 792.9 | 1.74% | motif file (matrix) |
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| 6 |  | Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-2 | -5.196e+00 | 0.3109 | 135.0 | 3.05% | 1107.3 | 2.44% | motif file (matrix) |
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| 7 |  | ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -5.161e+00 | 0.3109 | 63.0 | 1.43% | 461.3 | 1.01% | motif file (matrix) |
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