| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.103e+01 | 0.0043 | 2150.0 | 16.24% | 5481.3 | 14.93% | motif file (matrix) |
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| 2 |  | Sp1(Zf)/Promoter/Homer | 1e-3 | -7.992e+00 | 0.0446 | 351.0 | 2.65% | 808.2 | 2.20% | motif file (matrix) |
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| 3 |  | VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-2 | -6.517e+00 | 0.1301 | 490.0 | 3.70% | 1186.9 | 3.23% | motif file (matrix) |
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| 4 |  | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -6.271e+00 | 0.1301 | 2690.0 | 20.31% | 7089.1 | 19.31% | motif file (matrix) |
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| 5 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.868e+00 | 0.1494 | 2970.0 | 22.43% | 7868.8 | 21.44% | motif file (matrix) |
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| 6 |  | PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.512e+00 | 0.1777 | 1817.0 | 13.72% | 4751.0 | 12.94% | motif file (matrix) |
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| 7 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.072e+00 | 0.2366 | 944.0 | 7.13% | 2417.0 | 6.58% | motif file (matrix) |
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| 8 |  | p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -4.968e+00 | 0.2366 | 835.0 | 6.31% | 2128.2 | 5.80% | motif file (matrix) |
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| 9 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.742e+00 | 0.2559 | 1029.0 | 7.77% | 2653.3 | 7.23% | motif file (matrix) |
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| 10 |  | bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -4.679e+00 | 0.2559 | 1575.0 | 11.89% | 4126.4 | 11.24% | motif file (matrix) |
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