| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer | 1e-3 | -8.348e+00 | 0.0625 | 71.0 | 2.24% | 670.3 | 1.43% | motif file (matrix) | |
| 2 | | IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer | 1e-3 | -7.055e+00 | 0.1139 | 94.0 | 2.97% | 986.9 | 2.11% | motif file (matrix) | |
| 3 | | ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -5.253e+00 | 0.4604 | 45.0 | 1.42% | 439.4 | 0.94% | motif file (matrix) | |
| 4 | | RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -4.703e+00 | 0.5983 | 67.0 | 2.12% | 728.5 | 1.56% | motif file (matrix) |