LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
CUT&RUN of H3K36me2 (EpiCypher), H3K27me3, H3K27ac, H3K4me1 and H3K4me3 with NSD2 inhibitor (A5782)
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
MUT-0-IgG-Rep1 MUT-0-H3K4me3-Rep1 MUT-0-H3K4me1-Rep1 MUT-0-H3K4me1-Rep2 MUT-0-H3K27ac-Rep1 MUT-0-H3K27ac-Rep2 MUT-1-IgG-Rep1 MUT-1-H3K4me3-Rep1 MUT-1-H3K4me1-Rep1 MUT-1-H3K4me1-Rep2 MUT-1-H3K27ac-Rep1 MUT-1-H3K27ac-Rep2 MUT-0-IgG-Rep2 MUT-0-H3K4me3-Rep2 MUT-0-H3K36me2-Rep1 MUT-0-H3K36me2-Rep2 MUT-0-H3K27me3-Rep1 MUT-0-H3K27me3-Rep2 MUT-1-IgG-Rep2 MUT-1-H3K4me3-Rep2 MUT-1-H3K36me2-Rep1 MUT-1-H3K36me2-Rep2 MUT-1-H3K27me3-Rep1 MUT-1-H3K27me3-Rep2 WT-0-IgG-Rep WT-0-H3K4me3 WT-0-H3K36me2-Rep1 WT-0-H3K36me2-Rep2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
MUT_0-H3K4me3 MUT_1-H3K4me3 MUT_0-H3K4me1 MUT_1-H3K4me1 MUT_0-H3K27ac MUT_1-H3K27ac MUT_0-H3K36me2 MUT_1-H3K36me2 MUT_0-H3K27me3 MUT_1-H3K27me3 MUT_0-H3K36me2 WT_0-H3K36me2 MUT_0-H3K4me3 WT_0-H3K4me3
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes