LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
S-32D-Parental-aFLAG-1 S-32D-Parental-aFLAG-2 S-32D-Dnmt3a-FLAG-aFLAG-1 S-32D-Dnmt3a-FLAG-aFLAG-2 S-32D-Dnmt3a-FLAG-aDnmt3a-1 S-32D-Dnmt3a-FLAG-aDnmt3a-2 S-32D-Dnmt3a-FLAG-aH3K4me3-1 S-32D-Dnmt3a-FLAG-aH3K4me3-2 S-32D-Dnmt3a-FLAG-aIgG-1 S-32D-Dnmt3a-FLAG-aIgG-2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
S-32D-Parental-aFLAG S-32D-Dnmt3a-FLAG-aFLAG S-32D-Dnmt3a-FLAG-aDnmt3a S-32D-Dnmt3a-FLAG-aIgG S-32D-Dnmt3a-FLAG-aH3K4me3 S-32D-Dnmt3a-FLAG-aIgG
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2024-01-30 15:09:12
Analysis results:
https://lichtlab.cancer.ufl.edu/reports/MDS/EVM_CR_2023-09-18/