LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
32D_Dnmt3a_FLAG_aH3K4me3_1 32D_Dnmt3a_FLAG_aH3K4me3_2 32D_Dnmt3a_FLAG_aIgG_1 32D_Dnmt3a_FLAG_aIgG_2 32D_Dnmt3a_FLAG_aH3K36me2_1 32D_Dnmt3a_FLAG_aH3K36me2_2 32D_Dnmt3a_FLAG_aH3K36me3_1 32D_Dnmt3a_FLAG_aH3K36me3_2 32D_Dnmt3a_FLAG_aH3K4me1_1 32D_Dnmt3a_FLAG_aH3K4me1_2 32D_Dnmt3a_FLAG_aH3K27Ac_1 32D_Dnmt3a_FLAG_aH3K27Ac_2 32D_Dnmt3a_FLAG_aH3K27m3_1 32D_Dnmt3a_FLAG_aH3K27m3_2 32D_Dnmt3a_FLAG_aPolII_S2_P_1 32D_Dnmt3a_FLAG_aPolII_S2_P_2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
32D_Dnmt3a_FLAG_aH3K4me3_1/2 32D_Dnmt3a_FLAG_aIgG_1/2 32D_Dnmt3a_FLAG_aH3K36me2_1/2 32D_Dnmt3a_FLAG_aIgG_1/2 32D_Dnmt3a_FLAG_aH3K36me3_1/2 32D_Dnmt3a_FLAG_aIgG_1/2 32D_Dnmt3a_FLAG_aH3K4me1_1/2 32D_Dnmt3a_FLAG_aIgG_1/2 32D_Dnmt3a_FLAG_aH3K27Ac_1/2 32D_Dnmt3a_FLAG_aIgG_1/2 32D_Dnmt3a_FLAG_aH3K27m3_1/2 32D_Dnmt3a_FLAG_aIgG_1/2 32D_Dnmt3a_FLAG_aPolII_S2_P_1/2 32D_Dnmt3a_FLAG_aIgG_1/2
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes