LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Mut-0_Rep1 Mut-0_Rep2 Mut-0_Rep3 Mut-UNC8732-10_Rep1 Mut-UNC8732-10_Rep2 Mut-UNC8732-10_Rep3 Mut-UNC8884-10_Rep1 Mut-UNC8884-10_Rep2 Mut-UNC8884-10_Rep3 WT-0_Rep1 WT-0_Rep2 WT-0_Rep3 WT-UNC8732-10_Rep1 WT-UNC8732-10_Rep2 WT-UNC8732-10_Rep3 WT-UNC8884-10_Rep1 WT-UNC8884-10_Rep2 WT-UNC8884-10_Rep3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Mut-UNC8732-10 Mut-0 Mut-UNC8732-10 Mut-UNC8884-10 Mut-UNC8884-10 Mut-0 WT-UNC8732-10 WT-0 WT-UNC8732-10 WT-UNC8884-10 WT-UNC8884-10 WT-0 Mut-0 WT-0 Mut-UNC8732-10 WT-0 Mut-UNC8884-10 WT-0
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-12-20 15:12:03
Results:
https://lichtlab.cancer.ufl.edu/reports/NSD2/GE7114-NSD2deg/