LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
This data set is the RNA-seq analysis associated with cut-n-run data NS3570
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Beas2B_Parental_RNA_1 Beas2B_Parental_RNA_2 Beas2B_Parental_RNA_3 Beas2B_H3WT_HA_RNA_1 Beas2B_H3WT_HA_RNA_2 Beas2B_H3WT_HA_RNA_3 Beas2B_H3E97K_HA_Clone19_RNA_1 Beas2B_H3E97K_HA_Clone19_RNA_2 Beas2B_H3E97K_HA_Clone19_RNA_3 Beas2B_H3E97K_HA_Clone22_RNA_1 Beas2B_H3E97K_HA_Clone22_RNA_2 Beas2B_H3E97K_HA_Clone22_RNA_3 Beas2B_H3E97K_HA_Clone23_RNA_1 Beas2B_H3E97K_HA_Clone23_RNA_2 Beas2B_H3E97K_HA_Clone23_RNA_3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Beas2B_Parental_RNA_1/2/3 Beas2B_H3WT_HA_RNA_1/2/3 Beas2B_H3E97K_HA_Clone19_RNA_1/2/3 Beas2B_H3WT_HA_RNA_1/2/3 Beas2B_H3E97K_HA_Clone22_RNA_1/2/3 Beas2B_H3WT_HA_RNA_1/2/3 Beas2B_H3E97K_HA_Clone23_RNA_1/2/3 Beas2B_H3WT_HA_RNA_1/2/3
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-12-21 15:38:02
Analysis results:
https://lichtlab.cancer.ufl.edu/reports/H2B/GE7209/