LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
This is RNA-seq profiling associated with the Cut-n-Run of NS3526
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
32D_Dnmt3a_FLAG_IIH11_RNA_1(JX-1) 32D_Dnmt3a_FLAG_IIH11_RNA_2(JX-2) 32D_Dnmt3a_FLAG_IIH11_RNA_3(JX-3) 32D_Dnmt3a_FLAG_IIH11_RNA_4(JX-4)
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Note:This RNA-seq are to profile the whole transcriptome of a same cell line with quadruplet samples. So no contrast needed.
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2024-01-04 15:09:13
analysis done:
https://lichtlab.cancer.ufl.edu/reports/MDS/GE7176/