LichtLab Sequencing - run details
Back to list
Project
*
Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
*
Choose one...
RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
*
Organism / cell line
*
ICBR number (if known)
Owner
Notes
CUT&RUN on CRISPR-edited HA-tagged WT, HET, and HOM H2B-E76K BEAS2B cells Dec.2023/Jan2024 Kim Pereira. S2 and S5 are phosphorylated RNA Polymerase II S2 and S5. Pol II is Total RNA Polymerase II. IgG is negative control.
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
WT1-H3k4me1 WT2-H3K4me1 WT3-H3Keme1 WT1-S2 WT2-S2 WT3-S3 WT1-S5 WT2-S5 WT3-S5 WT1-PolII WT2-PolII WT3-PolII WT1-IgG WT2-IgG WT1-H3K4me3 HET1-H3k4me1 HET2-H3K4me1 HET3-H3Keme1 HET1-S2 HET2-S2 HET3-S2 HET1-S5 HET2-S5 HET3-S5 HET1-PolII HET2-PolII HET3-PolII HET1IgG HET2IgG HET1-H3K4me3 HOM1-HA HOM2-HA HOM3-HA HOM1-S2 HOM2-S2 HOM3-S2 HOM1-S5 HOM2-S5 HOM3-S5 HOM1-polII HOM2-PolII HOM3-PolII HOM1-IgG HOM2-IgG HOM3-H3K4me3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
HET WT HOM WT
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes