LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
CRISPR screen of uveal lemanoma cell line mel270 with brunello + MNK inhibitor
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Passage0Rep1Mel270CTLDay0 Passage0Rep2Mel270CTLDay0 Passage2Mel270CTLDay12 Passage2Rep1Mel270+Sel201Day6 Passage2Rep2Mel270+Sel201Day6 Passage5Rep1Mel270CTLDay21 Passage5Rep2Mel270CTLDay21 Passage5Rep1Mel270+Sel201Day15 Passage5Rep2Mel270+Sel201Day15 Passage7Rep1Mel270CTLDay27 Passage7Rep2Mel270CTLDay27 Passage7Rep3Mel270CTLDay27 Passage7Rep1Mel270+Sel201Day20 Passage7Rep2Mel270+Sel201Day20 Passage7Rep3Mel270+Sel201Day20
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
need a read count table of each guide ran in the brucellosis library for each sample
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes