LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Jx1:32D_Dnmt3a_FLAG_aP_S2_polII_1 Jx2:32D_Dnmt3a_FLAG_aP_S2_polII_2 Jx3:32D_Dnmt3a_FLAG_aP_S5_polII_1 Jx4:32D_Dnmt3a_FLAG_aP_S5_polII_2 Jx5:32D_Dnmt3a_FLAG_atotal_polII_1 Jx6:32D_Dnmt3a_FLAG_atotal_polII_2 Jx7:32D_Dnmt3a_FLAG_aH3K4me3_1 Jx8:32D_Dnmt3a_FLAG_aH3K4me3_2 Jx9:332D_Dnmt3a_FLAG_aIgG_1 Jx10:332D_Dnmt3a_FLAG_aIgG_2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
For this set of data, no need do contrast, just analyze samples individually, considering each independent, map the peak to the genome.
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes