LichtLab Sequencing - run details
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Project
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Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
For Kim and Jixiu
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
H3WT-1 H3WT-2 H3WT-3 H3E97K-1 H3E97K-2 H3E97K-3 WT-CTL-A HET-CTL-A HOM-CTL-A WT-Starve-A Het-Starve-A HOM-Starve-A WT-FBS-A HET-FBS-A HOM-FBS-A WT-CTL-C WT-CTL-B HET-CTL-B HET-CTL-C HOM-CTL-B HOM-CTL-C WT-Starve-B WT-Starve-C Het-Starve-B Het-Starve-C HOM-Starve-B HOM-Starve-C WT-FBS-B WT-FBS-C HET-FBS-B HET-FBS-C HOM-FBS-C HOM-FBS-B
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
test vs. control H3E97K vs. H3WT WT-Starve vs. WT-CTL WT-FBS VS WT-CTL HET-Starve vs. HET-CTL HET-FBS VS HET-CTL HOM-Starve vs. HOM-CTL HOM-FBS VS HOM-CTL HET-Starve vs. WT-STARVE HOM-STARVE VS WT-STARVE HET-FBS vs. WT-FBS HOM-FBS VS WT-FBS
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes