LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
32D_Parental_aKmt2CGelab_1 32D_Parental_aKmt2CGelab_2 32D_Parental_aKmt2C_miliporeHPA_1(IgG_1) 32D_Parental_aKmt2C_miliporeHPA_2(IgG_2)
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
This run is intended to see the global localization of Kmt2C and to test the antibody's specificity, relative to IgG. Please do the analysis by considering each sample as an independent sample.
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes