LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
ATAC-seq of BEAS2B histone H2B E76K mutant clones + drosophila spike-in
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
H2B_WT_A_1 H2B_WT_A_2 H2B_WT_A_3 H2B_WT_B_1 H2B_WT_B_2 H2B_WT_B_3 H2B_WT_C_1 H2B_WT_C_2 H2B_WT_C_3 H2B_E76Het_1 H2B_E76Het_2 H2B_E76Het_3 H2B_E76Hom_A_1 H2B_E76Hom_A_2 H2B_E76Hom_A_3 H2B_E76Hom_B_1 H2B_E76Hom_B_2 H2B_E76Hom_B_3 H2B_E76Hom_C_1 H2B_E76Hom_C_2 H2B_E76Hom_C_3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
test vs. control H2B_WT_A vs. H2B_WT_B H2B_WT_A vs. H2B_WT_C H2B_WT_B vs. H2B_WT_C H2B_E76Het vs. H2B_WT_A H2B_E76Hom_A vs. H2B_E76Hom_B H2B_E76Hom_A vs. H2B_E76Hom_C H2B_E76Hom_B vs. H2B_E76Hom_C H2B_E76Hom_A vs. H2B_WT_A
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes