LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
ATAC-seq of mantle cell lymphoma lines + drosophila spike in
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Z138_A1_1 Z138_A1_2 Z138_A1_3 Z138_C1_1 Z138_C1_2 Z138_C1_3 Z138_B9_1 Z138_B9_2 Z138_B9_3 Jeko_B2_1 Jeko_B2_2 Jeko_B2_3 Jeko_C2_1 Jeko_C2_2 Jeko_C2_3 Jeko_D10_1 Jeko_D10_2 Jeko_D10_3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Z138_A1 vs. Z138_C1 Z138_B9 vs. Z138_C1 Z138_A1 vs. Z138_B9 Jeko_B2 vs. Jeko_C2 Jeko_B2 vs. Jeko_D10 Jeko_C2 vs. Jeko_D10
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes