LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Z_A1_K36me2 Z_C1_K36me2 Z_B9_K36me2 J_B2_K36me2 J_C2_K36me2 J_D10_K36me2 Z_A1 IgG J_B2_IgG Z_A1_K27ac Z_C1_K27ac Z_B9_K27ac J_B2_K27ac J_C2_K27ac J_D10_K27ac Z_A1 K4me3 J_B2_K4me3 Z_A1_K4me1 Z_C1_K4me1 Z_B9_K4me1 J_B2_K4me1 J_C2_K4me1 J_D10_K4me1 Z_A1_K27me3 Z_C1_K27me3 Z_B9_K27me3 J_B2_K27me3 J_C2_K27me3 J_D10_K27me3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Z_B9_K36me2 Z_A1_K36me2 Z_C1_K36me2 Z_A1_K36me2 J_D10_K36me2 J_B2_K36me2 J_C2_K36me2 J_B2_K36me2 Z_B9_K27ac Z_A1_K27ac Z_C1_K27ac Z_A1_K27ac J_D10_K27ac J_B2_K27ac J_C2_K27ac J_B2_K27ac Z_B9_K4me1 Z_A1_K4me1 Z_C1_K4me1 Z_A1_K4me1 J_D10_K4me1 J_B2_K4me1 J_C2_K4me1 J_B2_K4me1 Z_B9_K27me3 Z_A1_K27me3 Z_C1_K27me3 Z_A1_K27me3 J_D10_K27me3 J_B2_K27me3 J_C2_K27me3 J_B2_K27me3
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes