LichtLab Sequencing - run details
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Project
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Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
S-2067-Dnmt3a S-2067-H3K4me1 S-2067-H3K27ac S-2067-H3K27me3 S-2067-H3K4me3 S-2067-IgG S-2068-H3K4me1 S-2068-H3K27ac S-2068-H3K27me3 S-2068-H3K4me3 S-2068-Dnmt3a S-2068-IgG S-2070-H3K4me3 S-2070-Dnmt3a S-2070-H3K4me1 S-2070-H3K27ac S-2070-H3K27me3 S-2070-IgG S-2071-H3K4me3 S-2071-Dnmt3a S-2071-H3K4me1 S-2071-H3K27ac S-2071-H3K27me3 S-2071-IgG S-2088-H3K4me3 S-2088-Dnmt3a S-2088-H3K4me1 S-2088-H3K27ac S-2088-H3K27me3 S-2088-IgG S-2104-H3K4me3 S-2104-Dnmt3a S-2104-H3K4me1 S-2104-H3K27ac S-2104-H3K27me3 S-2104-IgG
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Please do a preliminary analysis by considering each sample, even IgG as an independent sample (treatment).
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes