LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
atac seq of beas2b cells with either wild-type or mutant histone h3
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
BEAS2B_WTH3_cl3_rep1 BEAS2B_WTH3_cl3_rep2 BEAS2B_WTH3_cl3_rep3 BEAS2B_WTH3_cl6_rep1 BEAS2B_WTH3_cl6_rep2 BEAS2B_WTH3_cl7_rep1 BEAS2B_WTH3_cl7_rep2 BEAS2B_WTH3_cl7_rep3 BEAS2B_E97Khom_cl4_rep1 BEAS2B_E97Khom_cl4_rep2 BEAS2B_E97Khom_cl4_rep3 BEAS2B_E97Khom_cl5_rep1 BEAS2B_E97Khom_cl5_rep2 BEAS2B_E97Khom_cl13_rep1 BEAS2B_E97Khom_cl13_rep2 BEAS2B_E97Khom_cl13_rep3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
E97Khom_cl4 vs. WTH3_cl3 E97Khom_cl5 vs. WTH3_cl3 E97Khom_cl13 vs. WTH3_cl3 E97Khom_cl4 vs. WTH3_cl6 E97Khom_cl5 vs. WTH3_cl6 E97Khom_cl13 vs. WTH3_cl6 E97Khom_cl4 vs. WTH3_cl7 E97Khom_cl5 vs. WTH3_cl7 E97Khom_cl13 vs. WTH3_cl7
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes