LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
1 NTKO ctl K4me1 2 NTKO EZM K4me1 3 TKO ctl K4me1 4 TKO EZM K4me1 5 NTKO ctl K36me2 6 NTKO EZM K36me2 7 TKO ctl K36me2 8 TKO EZM K36me2 9 NTKO ctl K4me3 10 NTKO EZM K4me3 11 TKO ctl K4me3 12 TKO EZM K4me3 13 NTKO ctl K27ac 14 NTKO EZM K27ac 15 TKO ctl K27ac 16 TKO EZM K27ac 17 NTKO ctl K27me3 18 NTKO EZM K27me3 19 TKO ctl K27me3 20 TKO EZM K27me3 21 NTKO ctl K36me3 22 NTKO EZM K36me3 23 TKO ctl K36me3 24 TKO EZM K36me3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
NTKO EZM K27ac vs NTKO ctl K27ac TKO EZM K27ac vs TKO ctl K27ac TKO ctl K27ac vs NTKO ctl K27ac NTKO EZM K27me3 vs NTKO ctl K27me3 TKO EZM K27me3 vs TKO ctl K27me3 TKO ctl K27me3 vs NTKO ctl K27me3 NTKO EZM K36me3 vs NTKO ctl K36me3 TKO EZM K36me3 vs TKO ctl K36me3 TKO ctl K36me3 vs NTKO ctl K36me3 NTKO EZM K4me1 vs NTKO ctl K4me1 TKO EZM K4me1 vs TKO ctl K4me1 TKO ctl K4me1 vs NTKO ctl K4me1 NTKO EZM K4me3 vs NTKO ctl K4me3 TKO EZM K4me3 vs TKO ctl K4me3 TKO ctl K4me3 vs NTKO ctl K4me3 NTKO EZM K36me2 vs NTKO ctl K36me2 TKO EZM K36me2 vs TKO ctl K36me2 TKO ctl K36me2 vs NTKO ctl K36me2
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-06-23 15:57:42
Results:
https://lichtlab.cancer.ufl.edu/reports/UTX/NS3143/