LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
*
ICBR number (if known)
Owner
Notes
RNA seq of histone mutants vs. wt histones
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
BEAS2B_WTH2B_clA_rep1 BEAS2B_WTH2B_clA_rep2 BEAS2B_WTH2B_clA_rep3 BEAS2B_WTH2B_clB_rep1 BEAS2B_WTH2B_clB_rep2 BEAS2B_WTH2B_clB_rep3 BEAS2B_WTH2B_clC_rep1 BEAS2B_WTH2B_clC_rep2 BEAS2B_WTH2B_clC_rep3 BEAS2B_H2BE76Khet_clA_rep1 BEAS2B_H2BE76Khet_clA_rep2 BEAS2B_H2BE76Khet_clA_rep3 BEAS2B_H2BE76Khom_clA_rep1 BEAS2B_H2BE76Khom_clA_rep2 BEAS2B_H2BE76Khom_clA_rep3 BEAS2B_H2BE76Khom_clB_rep1 BEAS2B_H2BE76Khom_clB_rep2 BEAS2B_H2BE76Khom_clB_rep3 BEAS2B_H2BE76Khom_clC_rep1 BEAS2B_H2BE76Khom_clC_rep2 BEAS2B_H2BE76Khom_clC_rep3 BEAS2B_PARENTAL_rep1 BEAS2B_PARENTAL_rep2 BEAS2B_PARENTAL_rep3 BEAS2B_WTH2A_clA_rep1 BEAS2B_WTH2A_clA_rep2 BEAS2B_WTH2A_clA_rep3 BEAS2B_H2AE121Khom_clA_rep1 BEAS2B_H2AE121Khom_clA_rep2 BEAS2B_H2AE121Khom_clA_rep3 BEAS2B_H3WT_cl3_rep1 BEAS2B_H3WT_cl3_rep2 BEAS2B_H3WT_cl3_rep3 BEAS2B_H3WT_cl6_rep1 BEAS2B_H3WT_cl6_rep2 BEAS2B_H3WT_cl6_rep3 BEAS2B_H3WT_cl7_rep1 BEAS2B_H3WT_cl7_rep2 BEAS2B_H3WT_cl7_rep3 BEAS2B_H3E97Khom_cl4_rep1 BEAS2B_H3E97Khom_cl4_rep2 BEAS2B_H3E97Khom_cl4_rep3 BEAS2B_H3E97Khom_cl5_rep1 BEAS2B_H3E97Khom_cl5_rep2 BEAS2B_H3E97Khom_cl5_rep3 BEAS2B_H3E97Khom_cl13_rep1 BEAS2B_H3E97Khom_cl13_rep2 BEAS2B_H3E97Khom_cl13_rep3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes