LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
mouse bone marrow before and after differentiation
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
67 SS R1 68 SS R1 04 SS R1 71 SS R1 67 D R1 68 D R1 04 D R1 71D R1 67 SS R2 68 SS R2 04 SS R2 70 SS R2 71 SS R2 88 SS R2 67 D R2 68 D R2 04 D R2 70 D R2 71 D R2 88 D R2 67 SS R3 68 SS R3 04 SS R3 70 SS R3 71 SS R3 88 SS R3 67 D R3 68 D R3 04 D R3 70 D R3 71 D R3 88 D R3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Differentiated vs. Steady state 67D vs. 67 SS (Kmt2c Het) 68D vs. 68 SS (Wild type) 70D vs. 70 SS (Double Het) 71D vs. 71 SS (Double Het) 88D vs. 88 SS (Double Het) 04D vs. 04 SS (Dnmt3a Het) Undifferentiated- Kmt2c het (67 SS) vs Wild type (68 SS) Dnmt3a het (04 SS) vs Wild type (68 SS) Double het (70 SS, 71 SS & 88 SS) vs Wild type (68 SS) Dnmt3a het (04 SS) vs Kmt2c het (67 SS) Double het (70 SS, 71 SS & 88 SS) vs Kmt2c het (67 SS) Double het (70 SS, 71 SS & 88 SS) vs Dnmt3a het (04 SS) Differentiated- Kmt2c het (67D) vs Wild type (68D) Dnmt3a het (04D) vs Wild type (68D) Double het (70D, 71D & 88D) vs Wild type (68D) Kmt2c het (67D) vs. Dnmt3a het (04D) Double het (70D, 71D & 88D) vs Kmt2c het (67D) Double het (70D, 71D & 88D) vs Dnmt3a het (04D)
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes