LichtLab Sequencing - run details
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Project
*
Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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Choose one...
RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
*
ICBR number (if known)
Owner
Notes
This is for HiC, I selected RNA seq as HiC was not in the assay list
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
WT_Rep1 HDAC8 OE_Rep 1 WT_Rep 2 HDAC8 OE_Rep 2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
HDAC8 WT
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes