LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
*
Organism / cell line
*
ICBR number (if known)
Owner
Notes
CUT&TAG
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
NS-4021_10_het_jun_rep1_CUTAC_I710_CUTAC_I510_L005 NS-4021_11_het_jun_rep2_CUTAC_I711_CUTAC_I511_L005 NS-4021_12_het_jun_rep3_CUTAC_I712_CUTAC_I512_L005 NS-4021_13_hom_k27ac_rep1_CUTAC_I713_CUTAC_I513_L005 NS-4021_14_hom_k27ac_rep2_CUTAC_I714_CUTAC_I514_L005 NS-4021_15_hom_k27ac_rep3_CUTAC_I715_CUTAC_I515_L005 NS-4021_16_hom_jun_rep1_CUTAC_I716_CUTAC_I516_L005 NS-4021_17_hom_jun_rep2_CUTAC_I717_CUTAC_I517_L005 NS-4021_18_hom_jun_rep3_CUTAC_I718_CUTAC_I518_L005 NS-4021_19_IGG_rep1_CUTAC_I719_CUTAC_I519_L005 NS-4021_1_wt_K27ac_rep1_CUTAC_I701_CUTAC_I501_L005 NS-4021_20_IGG_rep2_CUTAC_I720_CUTAC_I520_L005 NS-4021_2_wt_K27ac_rep2_CUTAC_I702_CUTAC_I502_L005 NS-4021_3_wt_K27ac_rep3_CUTAC_I703_CUTAC_I503_L005 NS-4021_4_wt_jun_rep1_CUTAC_I704_CUTAC_I504_L005 NS-4021_5_wt_jun_rep2_CUTAC_I705_CUTAC_I505_L005 NS-4021_6_wt_jun_rep3_CUTAC_I706_CUTAC_I506_L005 NS-4021_7_het_k27ac_rep1_CUTAC_I707_CUTAC_I507_L005 NS-4021_8_het_k27ac_rep2_CUTAC_I708_CUTAC_I508_L005 NS-4021_9_het_k27ac_rep3_CUTAC_I709_CUTAC_I509_L005
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes