LichtLab Sequencing - run details
Back to list
Project
*
Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
*
Choose one...
RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
*
Organism / cell line
*
ICBR number (if known)
Owner
Notes
CUT&TAG
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
54_HOM_IggM_2 53_HOM_IggM_1 52_HOM_IggR_1 49_HET_IggR_1 51_HET_IggM_2 50_HET_IggM_1 48_WT_IggM_1 47_Unknown_2 46_WT_IggR_1 45_HOM_Stat1_3 44_HOM_Stat1_2 43_HOM_Stat1_1 42_HET_Stat1_3 41_HET_Stat1_2 40_HET_Stat1_1 39_WT_Stat1_3 38_WT_Stat1_2 37_WT_Stat1_1 36_HOM_p65_3 35_HOM_p65_2 34_HOM_p65_1 33_HET_p65_3 32_HET_p65_2 31_HET_p65_1 30_WT_p65_3 29_Unknown_1 28_WT_p65_1 27_HOM_ZNF384_3 26_HOM_ZNF384_2 25_HOM_ZNF384_1 24_HET_ZNF384_3 23_HET_ZNF384_2 22_HET_ZNF384_1 21_WT_ZNF384_3 20_WT_ZNF384_2 19_WT_ZNF384_1 18_HOM_Foxa1_3 17_HOM_Foxa1_2 16_HOM_Foxa1_1 15_HET_Foxa1_3 14_HET_Foxa1_2 13_HET_Foxa1_1 12_WT_Foxa1_3 11_WT_Foxa1_2 10_WT_Foxa1_1 9_HOM_CebpB_3 8_HOM_CebpB_2 7_HOM_CebpB_1 6_HET_CebpB_3 5_HET_CebpB_2 4_HET_CebpB_1 3_WT_CebpB_3 2_WT_CebpB_2 1_WT_CebpB_1
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes