LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
WT-H3K4me1-1 WT-H3K4me1-2 WT-H3K4me1-3 HET-H3K4me1-1 HET-H3K4me1-2 HET-H3K4me1-3 HOM-H3K4me1-1 HOM-H3K4me1-2 HOM-H3K4me1-3 WT-H3K27me3-1 WT-H3K27me3-2 WT-H3K27me3-3 HET-H3K27me3-1 HET-H3K27me3-2 HET-H3K27me3-3 HOM-H3K27me3-1 HOM-H3K27me3-2 HOM-H3K27me3-3 WT-H3K36me3-1 WT-H3K36me3-2 WT-H3K36me3-3 HET-H3K36me3-1 HET-H3K36me3-2 HET-H3K36me3-3 HOM-H3K36me3-1 HOM-H3K36me3-2 HOM-H3K36me3-3 WT-H3K9me3-1 WT-H3K9me3-2 WT-H3K9me3-3 HET-H3K9me3-1 HET-H3K9me3-2 HET-H3K9me3-3 HOM-H3K9me3-1 HOM-H3K9me3-2 HOM-H3K9me3-3 WT-igg-1 WT-igg-2 WT-igg-3 HET-igg-1 HET-igg-2 HET-igg-3 HOM-igg-1 HOM-igg-2 HOM-igg-3 WT-CTCF-1 WT-CTCF-2 WT-CTCF-3 HET-CTCF-1 HET-CTCF-2 HET-CTCF-3 HOM-CTCF-1 HOM-CTCF-2 HOM-CTCF-3 WT-H3K4me3-1 WT-H3K4me3-2 WT-H3K4me3-3 HET-H3K4me3-1 HET-H3K4me3-2 HET-H3K4me3-3 HOM-H3K4me3-1 HOM-H3K4me3-2 HOM-H3K4me3-3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes