LichtLab Sequencing - run details
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Project
*
Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
*
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
*
Organism / cell line
*
ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Vk32245 parent-1 VK empty vector-1 VK Nsd2-1 Vk32245 parent-2 VK empty vector-2 VK Nsd2-2 Vk32245 parent-3 VK empty vector-3 VK Nsd2-3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
VK Nsd2 vs VK empty vector VK empty vector vs Vk32245 parent
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes