LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
2 cell lines, empty vector vs. HDAC8
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
EV_1205Lu_1 EV_1205Lu_2 EV_1205Lu_3 HDAC8_1205Lu_1 HDAC8_1205Lu_2 HDAC8_1205Lu_3 EV_SKMEL28_1 EV_SKMEL28_2 EV_SKMEL28_3 HDAC8_SKMEL28_1 HDAC8_SKMEL28_2 HDAC8_SKMEL28_3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
EV_1205Lu HDAC8_1205Lu EV_SKMEL28 HDAC8_SKMEL28
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-06-25 15:18:45
Analysis done, results:
https://lichtlab.cancer.ufl.edu/reports/MEL/GE6816/