LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
CTL-2C-k27ac-1 CTL-2C-k27ac-2 CTL-2C-k27ac-3 Mut-9B-1 Mut-9B-2 Mut-9B-3 WT-CTCF-1 WT-CTCF-2 WT-CTCF-3 HET-CTCF-1 HET-CTCF-2 HET-CTCF-3 HOM-CTCF-1 HOM-CTCF-2 HOM-CTCF-3 WT-NFKB-1 WT-NFKB-2 WT-NFKB-3 HET-NFKB-1 HET-NFKB-2 HET-NFKB-3 HOM-NFKB-1 HOM-NFKB-2 HOM-NFKB-3 WT-RAD21-1 WT-RAD21-2 WT-RAD21-3 HET-RAD21-1 HET-RAD21-2 HET-RAD21-3 HOM-RAD21-1 HOM-RAD21-2 HOM-RAD21-3 Igg-2C-1 Igg-2C-2 Igg-2C-3 Igg-9B-1 Igg-9B-2 Igg-9B-3 Igg-WT-1 Igg-WT-2 igg-HET-1 Igg-HET-2 Igg-HOM-1 Igg-HOM-2 WT-DMSO WT-C29-10uM WT-C29-50uM WT-C29-100uM WT-C29-200uM HET-DMSO HET-C29-10uM HET-C29-50uM HET-C29-100uM HET-C29-200uM HOM-DMSO HOM-C29-10uM HOM-C29-50uM HOM-C29-100uM HOM-C29-200uM
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes