LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
numbers at the end of each sample name are replicate numbers; 3 replicates/condition
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
S-01 LP1 Scramble -DMSO 1 S-02 LP1 Scramble -DMSO 2 S-03 LP1 Scramble - DMSO 3 S-04 LP1 Scramble + Dex 1 S-05 LP1 Scramble + Dex 2 S-06 LP1 Scramble + Dex 3 S-07 LP1 FKBP5 - DMSO 1 S-08 LP1 FKBP5 - DMSO 2 S-09 LP1 FKBP5 - DMSO 3 S-10 LP1 FKBP5 +Dex 1 S-11 LP1 FKBP5 +Dex 2 S-12 LP1 FKBP5 +Dex 3 S-13 LP1 MAEA -DMSO 1 S-14 LP1 MAEA -DMSO 2 S-15 LP1 MAEA -DMSO 3 S-16 LP1 MAEA +Dex 1 S-17 LP1 MAEA +Dex 2 S-18 LP1 MAEA + Dex 3 S-19 LP1 WDR26 - DMSO 1 S-20 LP1 WDR26 - DMSO 2 S-21 LP1 WDR26 -DMSO 3 S-22 LP1 WDR26 + Dex 1 S-23 LP1 WDR26 + Dex 2 S-24 LP1 WDR26 + Dex 3 S-25 NTKO Scramble -DMSO 1 S-26 NTKO Scramble -DMSO 2 S-27 NTKO Scramble -DMSO 3 S-28 NTKO Scramble +Dex 1 S-29 NTKO Scramble + Dex 2 S-30 NTKO Scramble +Dex 3 S-31 NTKO FKBP5 - DMSO 1 S-32 NTKO FKBP5 - DMSO 2 S-33 NTKO FKBP5 - DMSO 3 S-34 NTKO FKBP5 + Dex 1 S-35 NTKO FKBP5 + Dex 2 S-36 NTKO FKBP5 + Dex 3 S-37 NTKO MAEA - DMSO 1 S-38 NTKO MAEA -DMSO 2 S-39 NTKO MAEA -DMSO 3 S-40 NTKO MAEA + Dex 1 S-41 NTKO MAEA + Dex 2 S-42 NTKO MAEA + Dex 3 S-43 NTKO WDR26 - DMSO 1 S-44 NTKO WDR26 - DMSO 2 S-45 NTKO WDR26 - DMSO 3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
LP1_Scramble-DMSO LP1_FKBP5-DMSO LP1_Scramble-DMSO LP1_MAEA-DMSO LP1_Scramble-DMSO LP1_WDR26-DMSO LP1_Scramble+Dex LP1_Scramble-DMSO LP1_FKBP5+Dex LP1_FKBP5-DMSO LP1_MAEA+Dex LP1_MAEA-DMSO LP1_WDR26+Dex LP1_WDR26-DMSO NTKO_Scramble-DMSO NTKO_FKBP5-DMSO NTKO_Scramble-DMSO NTKO_MAEA-DMSO NTKO_Scramble-DMSO NTKO_WDR26-DMSO NTKO_Scramble+Dex NTKO_Scramble-DMSO NTKO_FKBP5+Dex NTKO_FKBP5-DMSO NTKO_MAEA+Dex NTKO_MAEA-DMSO
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes