LichtLab Sequencing - run details
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Project
*
Choose one...
Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
*
ICBR number (if known)
Owner
Notes
RUN DATE IS 7/23
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
Sample ID COND S-25 Scramble-DMSO _1 S-26 Scramble-DMSO _2 S-27 Scramble-DMSO _3 S-43 WDR-DMSO_1 S-44 WDR-DMSO_2 S-45 WDR-DMSO_3 Scramble5nMDex-1 Scramble-Dex_1 Scramble5nMDex-2 Scramble-Dex_2 Scramble5nMDex-3 Scramble-Dex_3 WDR265nMDex-1 WDR-Dex_1 WDR265nMDex-2 WDR-Dex_2 WDR265nMDex-3 WDR-Dex_3
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
Scramble-Dex VS Scramble-DMSO Scramble-DMSO VS WDR-DMSO WDR-Dex VS WDR-DMSO WDR-Dex VS Scramble-Dex
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes