LichtLab Sequencing - run details
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Project
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Evans MDS
H2B - E76K
LeleLab collaboration
Melanoma
NSD2 - E1099K
Other
SETD2 inhibitor
UTX - KDM6A
Assay
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RNA-Seq
ChIP-Seq
CUT&RUN
ATAC-Seq
scRNA-Seq
CRISPR
Title
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Organism / cell line
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ICBR number (if known)
Owner
Notes
Musco Lab Collaboration
Samples
Enter sample names, one per row. If possible, use the format COND_SMP, where COND is an experimental condition and SMP is a unique sample name.
TKO-IgG TKO-H3K4me3 TKO-H3K27me3-Rep1 TKO-H3K27me3-Rep2 WT-IgG WT-H3K4me3 WT-H3K27me3-Rep1 WT-H3K27me3-Rep2 D1240A-IgG D1240A-H3K4me3 D1240A-H3K27me3-Rep1 D1240A-H3K27me3-Rep2 F1295A-IgG F1295A-H3K4me3 F1295A-H3K27me3-Rep1 F1295A-H3K27me3-Rep2
Contrasts
Enter contrasts, one per row. A contrast consists of two sample name separated by spaces, as in "Test Control".
WT TKO D1240A TKO F1295A TKO
Options
ERCC spike-ins
Dmel spike-ins
Ecoli spike-ins
Analyzed
Analysis notes
2023-06-23 15:50:44
Results:
https://lichtlab.cancer.ufl.edu/reports/MLC/PHD_CR_20230612/