Homer de novo Motif Results (RP-W-D-K36m3.motifs/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 36087
Total background sequences = 39333
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-111	-2.578e+02	0.21%	0.01%	41.8bp (62.3bp)	VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer(0.611) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-85	-1.966e+02	0.27%	0.01%	46.3bp (47.7bp)	BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer(0.628) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-81	-1.880e+02	0.20%	0.01%	40.6bp (34.8bp)	PB0104.1_Zscan4_1/Jaspar(0.635) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-80	-1.860e+02	0.16%	0.00%	46.7bp (0.0bp)	PB0208.1_Zscan4_2/Jaspar(0.719) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-75	-1.734e+02	0.23%	0.01%	39.2bp (54.7bp)	POL008.1_DCE_S_I/Jaspar(0.602) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-73	-1.703e+02	0.18%	0.01%	40.1bp (32.0bp)	Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer(0.672) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-70	-1.617e+02	0.15%	0.00%	44.5bp (0.0bp)	PB0163.1_Six6_2/Jaspar(0.593) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-68	-1.584e+02	0.22%	0.01%	42.4bp (13.8bp)	Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer(0.578) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-66	-1.529e+02	0.17%	0.01%	41.9bp (43.1bp)	STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer(0.587) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-63	-1.466e+02	0.20%	0.01%	38.7bp (25.2bp)	MA0136.1_ELF5/Jaspar(0.581) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-43	-9.931e+01	0.23%	0.03%	42.9bp (41.4bp)	MA0497.1_MEF2C/Jaspar(0.677) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-42	-9.696e+01	0.10%	0.00%	44.4bp (34.3bp)	PH0017.1_Cux1_2/Jaspar(0.725) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-40	-9.325e+01	0.20%	0.02%	40.9bp (38.4bp)	MA0136.1_ELF5/Jaspar(0.731) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-35	-8.270e+01	0.15%	0.02%	44.5bp (47.4bp)	PB0098.1_Zfp410_1/Jaspar(0.662) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-32	-7.476e+01	0.25%	0.05%	44.3bp (42.7bp)	IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.665) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-31	-7.260e+01	0.30%	0.07%	44.1bp (47.8bp)	PB0126.1_Gata5_2/Jaspar(0.631) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-31	-7.186e+01	0.18%	0.03%	40.0bp (54.5bp)	PB0207.1_Zic3_2/Jaspar(0.623) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-29	-6.834e+01	0.19%	0.03%	44.3bp (44.3bp)	MA0479.1_FOXH1/Jaspar(0.773) More Information \| Similar Motifs Found	motif file (matrix)
19		1e-28	-6.584e+01	0.25%	0.06%	40.9bp (46.6bp)	MA0442.1_SOX10/Jaspar(0.728) More Information \| Similar Motifs Found	motif file (matrix)
20		1e-27	-6.321e+01	0.20%	0.04%	47.3bp (34.9bp)	MA0100.2_Myb/Jaspar(0.679) More Information \| Similar Motifs Found	motif file (matrix)
21		1e-27	-6.227e+01	0.71%	0.34%	47.7bp (39.8bp)	MA0598.1_EHF/Jaspar(0.631) More Information \| Similar Motifs Found	motif file (matrix)
22		1e-25	-5.908e+01	1.56%	0.97%	44.5bp (43.4bp)	MA0079.3_SP1/Jaspar(0.642) More Information \| Similar Motifs Found	motif file (matrix)
23		1e-25	-5.876e+01	0.09%	0.01%	40.2bp (28.1bp)	PB0056.1_Rfxdc2_1/Jaspar(0.597) More Information \| Similar Motifs Found	motif file (matrix)
24		1e-25	-5.848e+01	0.23%	0.06%	47.1bp (46.3bp)	PB0146.1_Mafk_2/Jaspar(0.629) More Information \| Similar Motifs Found	motif file (matrix)
25		1e-24	-5.705e+01	0.23%	0.06%	47.8bp (33.0bp)	PB0188.1_Tcf7l2_2/Jaspar(0.655) More Information \| Similar Motifs Found	motif file (matrix)
26		1e-24	-5.591e+01	0.07%	0.00%	36.9bp (2.1bp)	MA0483.1_Gfi1b/Jaspar(0.636) More Information \| Similar Motifs Found	motif file (matrix)
27		1e-24	-5.591e+01	0.07%	0.00%	39.0bp (0.0bp)	POL009.1_DCE_S_II/Jaspar(0.666) More Information \| Similar Motifs Found	motif file (matrix)
28		1e-23	-5.521e+01	15.83%	13.93%	44.4bp (47.9bp)	BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer(0.903) More Information \| Similar Motifs Found	motif file (matrix)
29		1e-22	-5.230e+01	5.92%	4.76%	44.7bp (46.3bp)	MA0077.1_SOX9/Jaspar(0.700) More Information \| Similar Motifs Found	motif file (matrix)
30		1e-22	-5.211e+01	5.39%	4.29%	43.6bp (44.6bp)	RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer(0.642) More Information \| Similar Motifs Found	motif file (matrix)
31		1e-21	-4.953e+01	0.09%	0.01%	41.9bp (35.0bp)	ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.681) More Information \| Similar Motifs Found	motif file (matrix)
32		1e-19	-4.377e+01	6.16%	5.08%	41.8bp (42.9bp)	ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.678) More Information \| Similar Motifs Found	motif file (matrix)
33		1e-18	-4.359e+01	1.24%	0.78%	47.3bp (42.0bp)	PB0200.1_Zfp187_2/Jaspar(0.703) More Information \| Similar Motifs Found	motif file (matrix)
34		1e-18	-4.340e+01	0.09%	0.01%	45.4bp (35.4bp)	NFY(CCAAT)/Promoter/Homer(0.625) More Information \| Similar Motifs Found	motif file (matrix)
35		1e-18	-4.277e+01	0.07%	0.01%	46.4bp (16.0bp)	MF0009.1_TRP(MYB)_class/Jaspar(0.632) More Information \| Similar Motifs Found	motif file (matrix)
36		1e-17	-3.967e+01	4.16%	3.32%	43.7bp (44.0bp)	PB0159.1_Rfx4_2/Jaspar(0.730) More Information \| Similar Motifs Found	motif file (matrix)
37		1e-15	-3.499e+01	6.03%	5.08%	44.8bp (45.8bp)	MA0070.1_PBX1/Jaspar(0.683) More Information \| Similar Motifs Found	motif file (matrix)
38		1e-13	-3.162e+01	0.68%	0.40%	48.0bp (39.8bp)	PB0139.1_Irf5_2/Jaspar(0.793) More Information \| Similar Motifs Found	motif file (matrix)
39 *		1e-8	-1.956e+01	0.05%	0.01%	43.3bp (47.2bp)	MA0047.2_Foxa2/Jaspar(0.760) More Information \| Similar Motifs Found	motif file (matrix)
40 *		1e-6	-1.433e+01	0.59%	0.41%	44.9bp (45.3bp)	MA0161.1_NFIC/Jaspar(0.629) More Information \| Similar Motifs Found	motif file (matrix)
41 *		1e-6	-1.416e+01	1.26%	0.99%	43.3bp (47.6bp)	PB0166.1_Sox12_2/Jaspar(0.649) More Information \| Similar Motifs Found	motif file (matrix)
42 *		1e-4	-1.008e+01	0.07%	0.03%	46.9bp (38.4bp)	MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar(0.662) More Information \| Similar Motifs Found	motif file (matrix)
43 *		1e-2	-5.681e+00	0.04%	0.02%	43.7bp (52.2bp)	CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(0.640) More Information \| Similar Motifs Found	motif file (matrix)