Homer de novo Motif Results (upregulated-in-WT.homer/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1868
Total background sequences = 44722
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-13	-3.193e+01	6.48%	2.94%	298.2bp (302.8bp)	MA0490.1_JUNB/Jaspar(0.723) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-13	-3.188e+01	8.46%	4.31%	278.0bp (283.2bp)	Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer(0.641) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-13	-3.134e+01	1.02%	0.07%	205.6bp (232.3bp)	Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer(0.670) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-13	-3.120e+01	25.70%	18.47%	271.5bp (347.5bp)	PB0086.1_Tcfap2b_1/Jaspar(0.559) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-13	-3.082e+01	13.01%	7.82%	299.7bp (305.4bp)	CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer(0.819) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-12	-2.991e+01	11.24%	6.51%	311.2bp (350.0bp)	MA0024.2_E2F1/Jaspar(0.644) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-12	-2.959e+01	22.70%	16.02%	278.8bp (327.8bp)	MA0146.2_Zfx/Jaspar(0.617) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-12	-2.892e+01	10.01%	5.64%	269.3bp (289.2bp)	MA0130.1_ZNF354C/Jaspar(0.690) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-12	-2.833e+01	16.97%	11.27%	288.3bp (308.2bp)	NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.763) More Information \| Similar Motifs Found	motif file (matrix)
10 *		1e-11	-2.760e+01	3.53%	1.25%	267.5bp (343.0bp)	PB0095.1_Zfp161_1/Jaspar(0.594) More Information \| Similar Motifs Found	motif file (matrix)
11 *		1e-11	-2.715e+01	0.80%	0.05%	262.3bp (266.2bp)	PB0110.1_Bcl6b_2/Jaspar(0.647) More Information \| Similar Motifs Found	motif file (matrix)
12 *		1e-11	-2.683e+01	3.00%	0.97%	300.6bp (327.0bp)	p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(0.598) More Information \| Similar Motifs Found	motif file (matrix)
13 *		1e-11	-2.667e+01	1.55%	0.28%	313.6bp (305.9bp)	Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer(0.688) More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-11	-2.659e+01	31.85%	24.61%	285.5bp (304.9bp)	MA0157.1_FOXO3/Jaspar(0.789) More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-11	-2.645e+01	9.64%	5.53%	275.4bp (337.4bp)	MA0048.1_NHLH1/Jaspar(0.693) More Information \| Similar Motifs Found	motif file (matrix)
16 *		1e-11	-2.642e+01	1.12%	0.13%	271.4bp (298.2bp)	Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer(0.586) More Information \| Similar Motifs Found	motif file (matrix)
17 *		1e-11	-2.638e+01	2.25%	0.59%	267.7bp (284.7bp)	MA0491.1_JUND/Jaspar(0.793) More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-11	-2.571e+01	3.21%	1.12%	274.8bp (324.5bp)	PB0164.1_Smad3_2/Jaspar(0.643) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-11	-2.548e+01	2.14%	0.55%	274.2bp (320.7bp)	PB0154.1_Osr1_2/Jaspar(0.606) More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e-10	-2.521e+01	6.64%	3.38%	279.1bp (356.8bp)	PB0195.1_Zbtb3_2/Jaspar(0.634) More Information \| Similar Motifs Found	motif file (matrix)
21 *		1e-10	-2.504e+01	8.40%	4.69%	261.6bp (336.5bp)	PB0151.1_Myf6_2/Jaspar(0.728) More Information \| Similar Motifs Found	motif file (matrix)
22 *		1e-10	-2.473e+01	13.70%	8.90%	310.0bp (335.7bp)	PB0156.1_Plagl1_2/Jaspar(0.597) More Information \| Similar Motifs Found	motif file (matrix)
23 *		1e-10	-2.471e+01	1.55%	0.30%	302.6bp (422.4bp)	EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer(0.617) More Information \| Similar Motifs Found	motif file (matrix)
24 *		1e-10	-2.466e+01	0.86%	0.07%	261.4bp (287.1bp)	MA0161.1_NFIC/Jaspar(0.590) More Information \| Similar Motifs Found	motif file (matrix)
25 *		1e-10	-2.461e+01	5.35%	2.52%	277.0bp (319.8bp)	MA0130.1_ZNF354C/Jaspar(0.692) More Information \| Similar Motifs Found	motif file (matrix)
26 *		1e-10	-2.433e+01	1.28%	0.20%	312.7bp (263.7bp)	PB0172.1_Sox1_2/Jaspar(0.699) More Information \| Similar Motifs Found	motif file (matrix)
27 *		1e-10	-2.372e+01	1.12%	0.16%	289.1bp (277.6bp)	PB0006.1_Bcl6b_1/Jaspar(0.677) More Information \| Similar Motifs Found	motif file (matrix)
28 *		1e-10	-2.366e+01	1.55%	0.32%	316.9bp (299.8bp)	MA0057.1_MZF1_5-13/Jaspar(0.665) More Information \| Similar Motifs Found	motif file (matrix)
29 *		1e-10	-2.314e+01	1.02%	0.13%	273.7bp (271.4bp)	AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer(0.555) More Information \| Similar Motifs Found	motif file (matrix)
30 *		1e-9	-2.290e+01	0.70%	0.04%	264.2bp (347.8bp)	GFY(?)/Promoter/Homer(0.600) More Information \| Similar Motifs Found	motif file (matrix)
31 *		1e-9	-2.289e+01	1.34%	0.24%	319.2bp (300.6bp)	PB0032.1_IRC900814_1/Jaspar(0.654) More Information \| Similar Motifs Found	motif file (matrix)
32 *		1e-9	-2.173e+01	0.59%	0.03%	208.7bp (183.8bp)	MA0077.1_SOX9/Jaspar(0.756) More Information \| Similar Motifs Found	motif file (matrix)
33 *		1e-9	-2.134e+01	1.98%	0.56%	281.2bp (295.2bp)	PB0154.1_Osr1_2/Jaspar(0.673) More Information \| Similar Motifs Found	motif file (matrix)
34 *		1e-8	-2.038e+01	6.16%	3.32%	285.5bp (283.4bp)	PB0031.1_Hoxa3_1/Jaspar(0.717) More Information \| Similar Motifs Found	motif file (matrix)
35 *		1e-8	-2.017e+01	1.66%	0.43%	268.0bp (284.9bp)	MA0089.1_NFE2L1::MafG/Jaspar(0.690) More Information \| Similar Motifs Found	motif file (matrix)
36 *		1e-7	-1.756e+01	1.07%	0.21%	277.3bp (334.1bp)	PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer(0.833) More Information \| Similar Motifs Found	motif file (matrix)
37 *		1e-7	-1.614e+01	0.70%	0.09%	335.0bp (277.1bp)	MA0028.1_ELK1/Jaspar(0.621) More Information \| Similar Motifs Found	motif file (matrix)
38 *		1e-6	-1.475e+01	3.91%	2.03%	285.6bp (285.6bp)	MA0465.1_CDX2/Jaspar(0.544) More Information \| Similar Motifs Found	motif file (matrix)
39 *		1e-5	-1.189e+01	2.46%	1.17%	296.7bp (343.9bp)	MA0117.1_Mafb/Jaspar(0.670) More Information \| Similar Motifs Found	motif file (matrix)
40 *		1e-4	-1.093e+01	2.46%	1.22%	276.1bp (302.5bp)	PB0156.1_Plagl1_2/Jaspar(0.738) More Information \| Similar Motifs Found	motif file (matrix)
41 *		1e-4	-1.021e+01	1.23%	0.45%	266.6bp (313.0bp)	BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer(0.672) More Information \| Similar Motifs Found	motif file (matrix)
42 *		1e-4	-9.619e+00	58.57%	54.05%	288.1bp (286.2bp)	PB0163.1_Six6_2/Jaspar(0.753) More Information \| Similar Motifs Found	motif file (matrix)
43 *		1e-2	-6.836e+00	69.54%	66.11%	291.6bp (324.1bp)	Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.680) More Information \| Similar Motifs Found	motif file (matrix)